Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891116.1_cds_XP_016445835.1_40755
CDS Infomation

[gene=LOC107771022] [db_xref=GeneID:107771022] [protein=D-3-phosphoglycerate dehydrogenase 2, chloroplastic-like] [protein_id=XP_016445835.1] [location=join(55285..55936,56825..57201,57282..57392,57505..57600,57689..58360)] [gbkey=CDS]
Sequence

ATGGCGTCCACTCCTTCCCCTCGCACTGCCACCACCACCCTTCAAAATTCTCTCCTCTCT
TCTTCTTCTTCCTCTGTAAATCATAATAAGCCTTCAAATCTCTCTTTCCTCCACGCCTCC
TCAAATTCCTCTTCCCTCAAACTTTTCCACTCTGTTTCTGCTTCGTTTTCTCCATCAAAT
TCTTCTTCCACCATTTGTAATGTTATCAAAACTGTTGAATCTGCCGACATCTCATTCTCC
AACGCGAGAGATCTTGACGGTGTCGTTTCGATTCCCAAGCCAACCATTCTCGTCTCCGAG
AAACTTGGAGAGGCGGGTTTGGACCTGCTCCGTAGTTTCGGCAACGTGGATTGTTCGTAT
GACTTGTCTCCTCAGGATCTCTGTGCTAAGATCTCTTTGTGCGACGCGCTTATTGTACGG
AGTGGGACTAAGGTGACTCGAGAAGTCTTTGAGGCTGCACAGGGCCGTCTTAAAGTCGTC
GGAAGAGCTGGTGTTGGGATAGACAATGTGGATCTGCAAGCTGCTACTGAATTTGGTTGC
CTCGTCGTTAACGCGCCCACAGCTAATACTATTGCTGCTGCTGAGCATGGAATCGCTTTG
CTTACCTCCATGGCCCGTAACGTTGCTCAGGCTGATGCCTCCATGAAAGCTGGAAAATGG
TTGCGAAGCAAGTATGTGGGTGTTTCTCTTGTTGGGAAGACATTAGCAGTTATGGGCTTT
GGTAAAGTTGGTTCCGAGGTTGCAAGACGTGCAAAAGGCCTGGGTATGCATGTAATAGCC
CATGATCCTTATGCACCAGCTGACAGAGCTCGCGCTATTGGTGTGGATTTGGTTTCTTTT
GAGCAGGCCATAGCCACTGCTGACTTCGTCTCACTCCACATGCCTCTTACACCTGCTACT
AAGAAGGTATTCAATGATGACACATTCGCAAAGATGAAGAAAGGAGTCCGCCTTATAAAT
GTTGCTCGAGGGGGTGTTATTGATGAAGATGCATTAGTTAGAGCCCTTGACAGCGGAATA
GTTGCTCAGGCAGCACTTGATGTATTCACGGTGGAGCCACCACCAAAAGATAGTAAACTA
GTGCAACATGAGAATGTCACAGTTACACCTCATCTTGGAGCAAGCACAAAAGAAGCACAG
GAAGGAGTTGCGATTGAAATAGCTGAGGCTGTTGTTGGTGCTCTAAATGGGGAACTTTCT
GCTACCGCTGTGAATGCTCCAATGGTCCCTCCTGAGGTATTGTCCGAGTTGGCTCCTTAT
GTCGTGCTTGCTGAGAAACTAGGTAGACTGGCTGTACAGCTAGTGACTGGTGGAAGTGGA
ATTCAGAATGTGAAAGTGGTTTATAAATCAGCCAGGGACCCTGACAGCTTGGACACTAGA
CTTCTCCGAGCCATGGTAACAAAAGGCATTATTGAGCCAATATCCGATACAATCATCAAC
CTTGTAAATGCTGATTTCAGTGCAAAGCAGAAGGGTCTTCGTATTAGTGAAGAACGTGTT
ATTGTTGATTCGTCTCCAGAGTACCCTGTCGAGTCAATCCAGGTTCAAATTAGCAACGTG
CAATCAAGATTTGCAAGTGCTTTATCAGAGAATGGTAATATCAGCATCGAGGGGAAAGTG
AAGTATGGAGTTCCCCATCTTACACGGGTTGGTTCATTTAGCGTTGATGTGAGCTTGGAG
GGTAACCTCATCCTTTGCAAACAAGTGGACCAACCTGGTATGATCGGGCAAGTTGGAAAC
ATACTTGGTGAGAGTAATGTGAATGTGAGCTTTATGAGCGTTGGAAGAACCGTGAGGAGA
AAGCAGGCAATTATGGCAATTGGAGTAGACGAAGAACCAAACAAGGATACTCAGAAGAAA
ATTGGAGAGGTATCTGCAATTGAAGAATTTGTCTTCCTCAAACTATAG

Peptide Sequence

PEP ID

XP_016445835.1
PEP Infomation

PREDICTED: D-3-phosphoglycerate dehydrogenase 2, chloroplastic-like [Nicotiana tabacum]
Sequence

MASTPSPRTATTTLQNSLLSSSSSSVNHNKPSNLSFLHASSNSSSLKLFHSVSASFSPSN
SSSTICNVIKTVESADISFSNARDLDGVVSIPKPTILVSEKLGEAGLDLLRSFGNVDCSY
DLSPQDLCAKISLCDALIVRSGTKVTREVFEAAQGRLKVVGRAGVGIDNVDLQAATEFGC
LVVNAPTANTIAAAEHGIALLTSMARNVAQADASMKAGKWLRSKYVGVSLVGKTLAVMGF
GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFEQAIATADFVSLHMPLTPAT
KKVFNDDTFAKMKKGVRLINVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPPKDSKL
VQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVPPEVLSELAPY
VVLAEKLGRLAVQLVTGGSGIQNVKVVYKSARDPDSLDTRLLRAMVTKGIIEPISDTIIN
LVNADFSAKQKGLRISEERVIVDSSPEYPVESIQVQISNVQSRFASALSENGNISIEGKV
KYGVPHLTRVGSFSVDVSLEGNLILCKQVDQPGMIGQVGNILGESNVNVSFMSVGRTVRR
KQAIMAIGVDEEPNKDTQKKIGEVSAIEEFVFLKL

Transcript Sequence

Gene sequence data has not been registered.